1WR1 The complex structure of Dsk2p UBA with ubiquitin date
authors Ohno, A., Jee, J.G., Fujiwara, K., Tenno, T., Goda, N., Tochio, H., Hiroaki, H., kobayashi, H., Shirakawa, M.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
related structures by homologous chain: 1V81, 1XQQ
Primary referenceStructure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition., Ohno A, Jee J, Fujiwara K, Tenno T, Goda N, Tochio H, Kobayashi H, Hiroaki H, Shirakawa M, Structure. 2005 Apr;13(4):521-32. PMID:15837191
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (698 Kb) [Save to disk]
  • Biological Unit Coordinates (1wr1.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 1WR1
  • Retrieve 1WR1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WR1 from S2C, [Save to disk]
  • View 1WR1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WR1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WR1, from MSDmotif at EBI
  • Fold representative 1wr1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wr1_A] [1wr1_B] [1wr1]
  • SWISS-PROT database: [P48510] [P61864]
  • Domain organization of [DSK2_YEAST] [UBIQ_YEAST] by SWISSPFAM
  • Domains found in 1WR1: [UBA] [UBQ ] by SMART
  • Other resources with information on 1WR1
  • Community annotation for 1WR1 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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