1XQQ Signaling Protein date Oct 13, 2004
title Simultaneous Determination Of Protein Structure And Dynamics
authors K.Lindorff-Larsen, R.B.Best, M.A.Depristo, M.Vendruscolo, C.M.Dobson
compound source
Molecule: Ubiquitin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1D3Z, 1WR1
Primary referenceSimultaneous determination of protein structure and dynamics., Lindorff-Larsen K, Best RB, Depristo MA, Dobson CM, Vendruscolo M, Nature 2005 Jan 13;433(7022):128-32. PMID:15650731
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2858 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1XQQ
  • Retrieve 1XQQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XQQ from S2C, [Save to disk]
  • View 1XQQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XQQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XQQ, from MSDmotif at EBI
  • Fold representative 1xqq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xqq] [1xqq_A]
  • SWISS-PROT database: [P62988]
  • Domain organization of [UBIQ_HUMAN] by SWISSPFAM
  • Domain found in 1XQQ: [UBQ ] by SMART
  • Other resources with information on 1XQQ
  • Community annotation for 1XQQ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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