1VCB	Transcription	date	Mar 13, 1999
title	The Vhl-Elonginc-Elonginb Structure
authors	C.E.Stebbins, W.G.Kaelin, N.P.Pavletich
compound		source
Molecule: Protein (Elongin B) Chain: A, D, G, J Fragment: Residues 1-120 Engineered: Yes Other_details: Disordered Residues: 99-120		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pgex-4t3 Expression_system_gene: Vhl
Molecule: Protein (Elongin C) Chain: B, E, H, K Fragment: Residues 17-112 Engineered: Yes Other_details: Disordered Residues: 50-57		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pbb75 Expression_system_gene: Vhl
Molecule: Protein (Vhl) Chain: C, F, I, L Fragment: Residues 54-213 Engineered: Yes Other_details: Disordered Residues: 54-62, 205-213		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pgex-4t3 Expression_system_gene: Vhl Other_details: Vhl(54-213) Alternative Endogenous Polypepti
symmetry	Space Group: P 41 2 2	R_factor 0.238 R_Free 0.289
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.500 93.500 362.300 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
related structures	by homologous chain: 1LQB
Gene Ontology	Chain Function Process Component A, J, D, G H, K, E, B
Primary reference	Structure of the VHL-ElonginC-ElonginB complex: implications for VHL tumor suppressor function., Stebbins CE, Kaelin WG Jr, Pavletich NP, Science 1999 Apr 16;284(5413):455-61. PMID:10205047

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk] Biological Unit Coordinates (1vcb.pdb1.gz) 57 Kb Biological Unit Coordinates (1vcb.pdb2.gz) 57 Kb Biological Unit Coordinates (1vcb.pdb3.gz) 57 Kb Biological Unit Coordinates (1vcb.pdb4.gz) 58 Kb CSU: Contacts of Structural Units for 1VCB Likely Quarternary Molecular Structure file(s) for 1VCB Retrieve 1VCB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VCB from S2C, [Save to disk]

View 1VCB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VCB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VCB, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vcba_, region A [Jmol] [rasmolscript] [script source]     - Domain d1vcbb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1vcbc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1vcbd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1vcbe_, region E [Jmol] [rasmolscript] [script source]     - Domain d1vcbf_, region F [Jmol] [rasmolscript] [script source]     - Domain d1vcbg_, region G [Jmol] [rasmolscript] [script source]     - Domain d1vcbh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1vcbi_, region I [Jmol] [rasmolscript] [script source]     - Domain d1vcbj_, region J [Jmol] [rasmolscript] [script source]     - Domain d1vcbk_, region K [Jmol] [rasmolscript] [script source]     - Domain d1vcbl_, region L [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vcb_A] [1vcb] [1vcb_E] [1vcb_G] [1vcb_K] [1vcb_C] [1vcb_B] [1vcb_J] [1vcb_L] [1vcb_D] [1vcb_F] [1vcb_H] [1vcb_I] SWISS-PROT database: [Q15370] [Q15369] [P40337] Domain organization of [ELOB_HUMAN] [ELOC_HUMAN] [VHL_HUMAN] by SWISSPFAM Domains found in 1VCB: [Skp1] [UBQ ] by SMART

Other resources with information on 1VCB

Community annotation for 1VCB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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