1VCB Transcription date Mar 13, 1999
title The Vhl-Elonginc-Elonginb Structure
authors C.E.Stebbins, W.G.Kaelin, N.P.Pavletich
compound source
Molecule: Protein (Elongin B)
Chain: A, D, G, J
Fragment: Residues 1-120
Engineered: Yes
Other_details: Disordered Residues: 99-120
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pgex-4t3
Expression_system_gene: Vhl

Molecule: Protein (Elongin C)
Chain: B, E, H, K
Fragment: Residues 17-112
Engineered: Yes
Other_details: Disordered Residues: 50-57

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pbb75
Expression_system_gene: Vhl

Molecule: Protein (Vhl)
Chain: C, F, I, L
Fragment: Residues 54-213
Engineered: Yes
Other_details: Disordered Residues: 54-62, 205-213

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pgex-4t3
Expression_system_gene: Vhl
Other_details: Vhl(54-213) Alternative Endogenous Polypeptide
symmetry Space Group: P 41 2 2
R_factor 0.238 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.500 93.500 362.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
related structures by homologous chain: 1LQB
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, G


H, K, E, B


Primary referenceStructure of the VHL-ElonginC-ElonginB complex: implications for VHL tumor suppressor function., Stebbins CE, Kaelin WG Jr, Pavletich NP, Science 1999 Apr 16;284(5413):455-61. PMID:10205047
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]
  • Biological Unit Coordinates (1vcb.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (1vcb.pdb2.gz) 58 Kb
  • Biological Unit Coordinates (1vcb.pdb3.gz) 58 Kb
  • Biological Unit Coordinates (1vcb.pdb4.gz) 59 Kb
  • CSU: Contacts of Structural Units for 1VCB
  • Likely Quarternary Molecular Structure file(s) for 1VCB
  • Retrieve 1VCB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VCB from S2C, [Save to disk]
  • View 1VCB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VCB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VCB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vcba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1vcbb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1vcbc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1vcbd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1vcbe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1vcbf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1vcbg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1vcbh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1vcbi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1vcbj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1vcbk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1vcbl_, region L [Jmol] [rasmolscript] [script source]
  • Fold representative 1vcb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vcb_A] [1vcb] [1vcb_E] [1vcb_G] [1vcb_K] [1vcb_C] [1vcb_B] [1vcb_J] [1vcb_L] [1vcb_D] [1vcb_F] [1vcb_H] [1vcb_I]
  • SWISS-PROT database: [Q15370] [Q15369] [P40337]
  • Domain organization of [ELOB_HUMAN] [ELOC_HUMAN] [VHL_HUMAN] by SWISSPFAM
  • Domains found in 1VCB: [Skp1] [UBQ ] by SMART
  • Other resources with information on 1VCB
  • Community annotation for 1VCB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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