1VCW Crystal structure of DegS after backsoaking the activating peptide date
authors Wilken, C., Kitzing, K., Kurzbauer, R., Ehrmann, M., Clausen, T.
compound source
symmetry
R_factor
R_Free 0.301
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.05
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal structure of the DegS stress sensor: How a PDZ domain recognizes misfolded protein and activates a protease., Wilken C, Kitzing K, Kurzbauer R, Ehrmann M, Clausen T, Cell 2004 May 14;117(4):483-94. PMID:15137941
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (1vcw.pdb1.gz) 130 Kb
  • CSU: Contacts of Structural Units for 1VCW
  • Likely Quarternary Molecular Structure file(s) for 1VCW
  • Structure Factors (193 Kb)
  • Retrieve 1VCW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VCW from S2C, [Save to disk]
  • Re-refined 1vcw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VCW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VCW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VCW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vcwa1, region A:255-353 [Jmol] [rasmolscript] [script source]
        - Domain d1vcwa2, region A:42-254 [Jmol] [rasmolscript] [script source]
        - Domain d1vcwb1, region B:255-353 [Jmol] [rasmolscript] [script source]
        - Domain d1vcwb2, region B:42-254 [Jmol] [rasmolscript] [script source]
        - Domain d1vcwc1, region C:255-353 [Jmol] [rasmolscript] [script source]
        - Domain d1vcwc2, region C:42-254 [Jmol] [rasmolscript] [script source]
  • Fold representative 1vcw from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vcw_B] [1vcw_A] [1vcw_C] [1vcw]
  • SWISS-PROT database: [P0AEE3]
  • Domain organization of [DEGS_ECOLI] by SWISSPFAM
  • Domain found in 1VCW: [PDZ ] by SMART
    • Other resources with information on 1VCW
  • Community annotation for 1VCW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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