1VCW	Hydrolase	date	Mar 16, 2004
title	Crystal Structure Of Degs After Backsoaking The Activating Peptide
authors	C.Wilken, K.Kitzing, R.Kurzbauer, M.Ehrmann, T.Clausen
compound		source
Molecule: Protease Degs Chain: A, B, C Ec: 3.4.21.- Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Degs, Hhob, Htrh, B3235, Z4594, Ecs4108 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21b
symmetry	Space Group: C 1 2 1	R_factor 0.233 R_Free 0.301
crystal cell	length a length b length c angle alpha angle beta angle gamma 206.990 142.733 41.231 90.00 90.09 90.00
method	X-Ray Diffraction	resolution	3.05 Å
ligand		enzyme	Hydrolase E.C.3.4.21 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Crystal structure of the DegS stress sensor: How a PDZ domain recognizes misfolded protein and activates a protease., Wilken C, Kitzing K, Kurzbauer R, Ehrmann M, Clausen T, Cell 2004 May 14;117(4):483-94. PMID:15137941

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (1vcw.pdb1.gz) 130 Kb CSU: Contacts of Structural Units for 1VCW Likely Quarternary Molecular Structure file(s) for 1VCW Structure Factors (193 Kb) Retrieve 1VCW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VCW from S2C, [Save to disk] Re-refined 1vcw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VCW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VCW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VCW, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vcwa1, region A:255-353 [Jmol] [rasmolscript] [script source]     - Domain d1vcwa2, region A:42-254 [Jmol] [rasmolscript] [script source]     - Domain d1vcwb1, region B:255-353 [Jmol] [rasmolscript] [script source]     - Domain d1vcwb2, region B:42-254 [Jmol] [rasmolscript] [script source]     - Domain d1vcwc1, region C:255-353 [Jmol] [rasmolscript] [script source]     - Domain d1vcwc2, region C:42-254 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vcw_B] [1vcw_A] [1vcw_C] [1vcw] SWISS-PROT database: [P0AEE3] Domain organization of [DEGS_ECOLI] by SWISSPFAM Domain found in 1VCW: [PDZ ] by SMART

Other resources with information on 1VCW

Community annotation for 1VCW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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