1VFL Hydrolase date Apr 16, 2004
title Adenosine Deaminase
authors T.Kinoshita
compound source
Molecule: Adenosine Deaminase
Chain: A
Ec: 3.5.4.4
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Intestine
symmetry Space Group: P 43 21 2
R_factor 0.230 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.726 73.726 134.013 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ZN enzyme Hydrolase E.C.3.5.4.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis of Compound Recognition by Adenosine Deaminase., Kinoshita T, Nakanishi I, Terasaka T, Kuno M, Seki N, Warizaya M, Matsumura H, Inoue T, Takano K, Adachi H, Mori Y, Fujii T, Biochemistry 2005 Aug 9;44(31):10562-10569. PMID:16060665
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1vfl.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1VFL
  • CSU: Contacts of Structural Units for 1VFL
  • Likely Quarternary Molecular Structure file(s) for 1VFL
  • Structure Factors (283 Kb)
  • Retrieve 1VFL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VFL from S2C, [Save to disk]
  • Re-refined 1vfl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VFL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VFL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VFL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vfl] [1vfl_A]
  • SWISS-PROT database: [P56658]
  • Domain organization of [ADA_BOVIN] by SWISSPFAM
    • Other resources with information on 1VFL
  • Community annotation for 1VFL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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