1VIA	Transferase	date	Dec 01, 2003
title	Crystal Structure Of Shikimate Kinase
authors	Structural Genomix
compound		source
Molecule: Shikimate Kinase Chain: A, B Ec: 2.7.1.71 Engineered: Yes		Organism_scientific: Campylobacter Jejuni Organism_taxid: 197 Gene: Arok Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor 0.198 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.931 43.230 52.606 81.51 76.58 77.87
method	X-Ray Diffraction	resolution	1.57 Å
ligand	MSE, SO4	enzyme	Transferase E.C.2.7.1.71 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural analysis of a set of proteins resulting from a bacterial genomics project., Badger J, Sauder JM, Adams JM, Antonysamy S, Bain K, Bergseid MG, Buchanan SG, Buchanan MD, Batiyenko Y, Christopher JA, Emtage S, Eroshkina A, Feil I, Furlong EB, Gajiwala KS, Gao X, He D, Hendle J, Huber A, Hoda K, Kearins P, Kissinger C, Laubert B, Lewis HA, Lin J, Loomis K, Lorimer D, Louie G, Maletic M, Marsh CD, Miller I, Molinari J, Muller-Dieckmann HJ, Newman JM, Noland BW, Pagarigan B, Park F, Peat TS, Post KW, Radojicic S, Ramos A, Romero R, Rutter ME, Sanderson WE, Schwinn KD, Tresser J, Winhoven J, Wright TA, Wu L, Xu J, Harris TJ, Proteins 2005 Sep 1;60(4):787-96. PMID:16021622

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (1via.pdb1.gz) 59 Kb LPC: Ligand-Protein Contacts for 1VIA CSU: Contacts of Structural Units for 1VIA Likely Quarternary Molecular Structure file(s) for 1VIA Structure Factors (522 Kb) Retrieve 1VIA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VIA from S2C, [Save to disk] Re-refined 1via structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VIA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VIA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VIA, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1viaa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1viab_, region B [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1via] [1via_B] [1via_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 1VIA

Community annotation for 1VIA at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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