1VJB Transcription date Feb 03, 2004
title Crystal Structure Of The Ligand-Binding Domain Of The Estrog Receptor Gamma In Complex With 4-Hydroxytamoxifen
authors H.Greschik, R.Flaig, J.P.Renaud, D.Moras
compound source
Molecule: Estrogen-Related Receptor Gamma
Chain: A, B
Synonym: Estrogen Receptor-Related Protein 3,Nuclear Recept Subfamily 3 Group B Member 3;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Esrrg, Err3, Kiaa0832, Nr3b3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-15b
symmetry Space Group: P 32 2 1
R_factor 0.256 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.624 74.624 144.778 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand OHT BindingDB enzyme
Primary referenceStructural basis for the deactivation of the estrogen-related receptor gamma by diethylstilbestrol or 4-hydroxytamoxifen and determinants of selectivity., Greschik H, Flaig R, Renaud JP, Moras D, J Biol Chem 2004 May 24;. PMID:15161930
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (1vjb.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1VJB
  • CSU: Contacts of Structural Units for 1VJB
  • Likely Quarternary Molecular Structure file(s) for 1VJB
  • Structure Factors (63 Kb)
  • Retrieve 1VJB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VJB from S2C, [Save to disk]
  • Re-refined 1vjb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VJB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VJB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VJB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vjba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1vjbb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1vjb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vjb_A] [1vjb] [1vjb_B]
  • SWISS-PROT database: [P62508]
  • Domain organization of [ERR3_HUMAN] by SWISSPFAM
  • Domain found in 1VJB: [HOLI ] by SMART
  • Other resources with information on 1VJB
  • Community annotation for 1VJB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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