1VKM		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	EDO, MN, MSE, UNL	enzyme
Gene Ontology	Chain Function Process Component C, F, B, A, E, D pseudouridylate synthase act...
Primary reference	Crystal structure of an indigoidine synthase A (IndA)-like protein (TM1464) from Thermotoga maritima at 1.90 A resolution reveals a new fold., Levin I, Miller MD, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Biorac T, Cambell J, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Morse A, Moy K, Nigoghossian E, Ouyang J, Page R, Quijano K, Reyes R, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Zagnitko O, Hodgson KO, Wooley J, Wilson IA, Proteins 2005 Jun 1;59(4):864-8. PMID:15822122

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (309 Kb) [Save to disk] Biological Unit Coordinates (1vkm.pdb1.gz) 150 Kb Biological Unit Coordinates (1vkm.pdb2.gz) 150 Kb Biological Unit Coordinates (1vkm.pdb3.gz) 293 Kb LPC: Ligand-Protein Contacts for 1VKM CSU: Contacts of Structural Units for 1VKM Likely Quarternary Molecular Structure file(s) for 1VKM Structure Factors (20240 Kb) Retrieve 1VKM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VKM from S2C, [Save to disk] Re-refined 1vkm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VKM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vkm] [1vkm_A] [1vkm_B] [1vkm_C] [1vkm_D] [1vkm_E] [1vkm_F] SWISS-PROT database: [Q9X1H5]

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