1VMC Cytokine date Sep 20, 2004
title Stroma Cell-Derived Factor-1alpha (Sdf-1alpha)
authors E.K.Gozansky, G.M.Clore
compound source
Molecule: Stromal Cell-Derived Factor 1
Chain: A
Fragment: Sdf-1alpha (Residues 22-89)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cxcl12, Sdf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1A15, 2SDF

Primary referenceMapping the binding of the N-terminal extracellular tail of the CXCR4 receptor to stromal cell-derived factor-1alpha., Gozansky EK, Louis JM, Caffrey M, Clore GM, J Mol Biol 2005 Jan 28;345(4):651-8. PMID:15588815
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1VMC
  • Original NMR restraints for 1VMC from PDB
  • Retrieve 1VMC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VMC from S2C, [Save to disk]
  • View 1VMC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VMC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VMC, from MSDmotif at EBI
  • Fold representative 1vmc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vmc] [1vmc_A]
  • SWISS-PROT database: [P48061]
  • Domain organization of [SDF1_HUMAN] by SWISSPFAM
  • Domain found in 1VMC: [SCY ] by SMART
  • Other resources with information on 1VMC
  • Community annotation for 1VMC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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