1VOM Muscle Protein date Nov 09, 1995
title Complex Between Dictyostelium Myosin And Mgadp And Vanadate At 1.9a Resolution
authors I.Rayment, C.A.Smith
compound source
Molecule: Myosin
Chain: A
Fragment: Truncated At Residue 762
Engineered: Yes
Other_details: This Molecule Was Truncated To Yield A Fragment That Crystallizes Readily
Organism_scientific: Dictyostelium Discoideum
Organism_taxid: 44689
Expression_system: Dictyostelium Discoideum
Expression_system_taxid: 44689
symmetry Space Group: P 21 21 2
R_factor 0.194 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.500 145.400 153.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ADP, MG, VO4 enzyme
related structures by homologous chain: 1MMG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray structure of the magnesium(II).ADP.vanadate complex of the Dictyostelium discoideum myosin motor domain to 1.9 A resolution., Smith CA, Rayment I, Biochemistry 1996 Apr 30;35(17):5404-17. PMID:8611530
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (1vom.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 1VOM
  • CSU: Contacts of Structural Units for 1VOM
  • Likely Quarternary Molecular Structure file(s) for 1VOM
  • Retrieve 1VOM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VOM from S2C, [Save to disk]
  • View 1VOM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VOM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VOM, from MSDmotif at EBI
  • Genome occurence of 1VOM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vom_2, region 2-33,80-747 [Jmol] [rasmolscript] [script source]
        - Domain d1vom_1, region 34-79 [Jmol] [rasmolscript] [script source]
  • Fold representative 1vom from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vom_A] [1vom]
  • SWISS-PROT database: [P08799]
  • Domain organization of [MYS2_DICDI] by SWISSPFAM
  • Domain found in 1VOM: [MYSc ] by SMART
  • Other resources with information on 1VOM
  • Community annotation for 1VOM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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