1VTO Transcription Dna date Sep 06, 1996
title 1.9 A Resolution Refined Structure Of Tbp Recognizing The Mi Of Tataaaag
authors J.L.Kim, S.K.Burley
compound source
Molecule: Dna (5'-D(Gpcptpaptpapapapapgpgpgpcp
Chain: C, E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Tpgpcpcpcptptptptpaptpapgp
Chain: D, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Tata Binding Protein
Chain: A, B
Synonym: Transcription Initiation Factor Tfiid-1, Tata-Box Tbp-1

Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.000 147.000 57.000 90.00 90.50 90.00
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • obsolete general RNA polymer...


  • Primary reference1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG., Kim JL, Burley SK, Nat Struct Biol. 1994 Sep;1(9):638-53. PMID:7634103
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (1vto.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (1vto.pdb2.gz) 63 Kb
  • CSU: Contacts of Structural Units for 1VTO
  • Retrieve 1VTO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VTO from S2C, [Save to disk]
  • View 1VTO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VTO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VTO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vto_F] [1vto_C] [1vto] [1vto_E] [1vto_A] [1vto_D] [1vto_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1VTO
  • Community annotation for 1VTO at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science