1VYA		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
Gene Ontology	Chain Function Process Component A, D, C, G, B, I, E, J, F, L, H, K
Primary reference	The Maize (Zea mays L.) Nucleoside Diphosphate Kinase1 (ZmNDPK1) Gene Encodes a Human NM23-H2 Homologue That Binds and Stabilizes G-Quadruplex DNA., Kopylov M, Bass HW, Stroupe ME, Biochemistry. 2015 Mar 10;54(9):1743-57. doi: 10.1021/bi501284g. Epub 2015 Feb, 24. PMID:25679041

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk] Biological Unit Coordinates (1vya.pdb1.gz) 163 Kb Biological Unit Coordinates (1vya.pdb2.gz) 164 Kb CSU: Contacts of Structural Units for 1VYA Structure Factors (3091 Kb) Retrieve 1VYA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VYA from S2C, [Save to disk] Re-refined 1vya structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VYA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vya] [1vya_A] [1vya_B] [1vya_C] [1vya_D] [1vya_E] [1vya_F] [1vya_G] [1vya_H] [1vya_I] [1vya_J] [1vya_K] [1vya_L] SWISS-PROT database: Domain found in 1VYA: [NDK ] by SMART

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