1VZM Calcium-Binding Protein date May 21, 2004
title Osteocalcin From Fish Argyrosomus Regius
authors C.Frazao, D.C.Simes, R.Coelho, D.Alves, M.K.Williamson, P.A.Price M.L.Cancela, M.A.Carrondo
compound source
Molecule: Osteocalcin
Chain: A, B, C
 Organism_scientific: Argyrosomus Regius
Organism_common: Meagre
Organism_taxid: 172269
symmetry Space Group: P 32 2 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.700 48.700 119.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.40 Å
ligand CGU, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural evidence of a fourth Gla residue in fish osteocalcin: biological implications., Frazao C, Simes DC, Coelho R, Alves D, Williamson MK, Price PA, Cancela ML, Carrondo MA, Biochemistry. 2005 Feb 1;44(4):1234-42. PMID:15667217
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1vzm.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (1vzm.pdb2.gz) 18 Kb
  • Biological Unit Coordinates (1vzm.pdb3.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1VZM
  • CSU: Contacts of Structural Units for 1VZM
  • Likely Quarternary Molecular Structure file(s) for 1VZM
  • Structure Factors (282 Kb)
  • Retrieve 1VZM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VZM from S2C, [Save to disk]
  • Re-refined 1vzm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VZM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VZM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1VZM 1VZMA 1VZMB 1VZMC from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VZM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vzm_A] [1vzm] [1vzm_B] [1vzm_C]
  • SWISS-PROT database: [Q800Y1]
  • Domain organization of [OSTCN_ARGRE] by SWISSPFAM
    • Other resources with information on 1VZM
  • Community annotation for 1VZM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science