1WDI Structural Genomics, Unknown Function date May 17, 2004
title Crystal Structure Of Tt0907 From Thermus Thermophilus Hb8
authors M.Idaka, H.Yagi, K.Murayama, T.Terada, S.Kuramitsu, M.Shirouzu, S. Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Hypothetical Protein Tt0907
Chain: A
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 21 21 2
R_factor 0.237 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.791 77.275 73.561 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CIT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1wdi.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1WDI
  • CSU: Contacts of Structural Units for 1WDI
  • Likely Quarternary Molecular Structure file(s) for 1WDI
  • Retrieve 1WDI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WDI from S2C, [Save to disk]
    • View 1WDI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WDI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WDI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wdia_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wdi] [1wdi_A]
  • SWISS-PROT database: [Q72JS5]
  • Domain organization of [QUEA_THET2] by SWISSPFAM
    • Other resources with information on 1WDI
  • Community annotation for 1WDI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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