1WFO Cell Adhesion date May 26, 2004
title The Eighth Fn3 Domain Of Human Sidekick-2
authors T.Nagashima, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Sidekick 2
Chain: A
Fragment: Fn3 Domain
Synonym: Drosophila Sidekick-Like, Chicken Sidekick 2-Like
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Fh00815
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040223-52
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
note 1WFO is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (651 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1WFO
  • Original NMR restraints for 1WFO from PDB
  • Retrieve 1WFO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WFO from S2C, [Save to disk]
  • View 1WFO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WFO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WFO, from MSDmotif at EBI
  • Fold representative 1wfo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wfo] [1wfo_A]
  • SWISS-PROT database: [Q58EX2]
  • Domain organization of [SDK2_HUMAN] by SWISSPFAM
  • Domain found in 1WFO: [FN3 ] by SMART
  • Other resources with information on 1WFO
  • Community annotation for 1WFO at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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