1WOQ Transferase date Aug 24, 2004
title Crystal Structure Of Inorganic Polyphosphateatp-Glucomannok Arthrobacter Sp. Strain Km At 1.8 A Resolution
authors T.Mukai, S.Kawai, S.Mori, B.Mikami, K.Murata
compound source
Molecule: Inorganic Polyphosphateatp-Glucomannokinase
Chain: A, B
Ec: 2.7.1.63
Engineered: Yes
Organism_scientific: Arthrobacter Sp.
Organism_taxid: 184230
Strain: Km
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b-Gmk
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.214 82.524 102.055 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BGC, PO4 enzyme Transferase E.C.2.7.1.63 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of bacterial inorganic polyphosphate/ATP-glucomannokinase. Insights into kinase evolution., Mukai T, Kawai S, Mori S, Mikami B, Murata K, J Biol Chem 2004 Nov 26;279(48):50591-600. Epub . PMID:15377666
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (1woq.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (1woq.pdb2.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 1WOQ
  • CSU: Contacts of Structural Units for 1WOQ
  • Likely Quarternary Molecular Structure file(s) for 1WOQ
  • Structure Factors (534 Kb)
  • Retrieve 1WOQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WOQ from S2C, [Save to disk]
  • Re-refined 1woq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WOQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WOQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WOQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1woqa1, region A:11-139 [Jmol] [rasmolscript] [script source]
        - Domain d1woqa2, region A:140-263 [Jmol] [rasmolscript] [script source]
        - Domain d1woqb1, region B:11-139 [Jmol] [rasmolscript] [script source]
        - Domain d1woqb2, region B:140-263 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1woq_A] [1woq_B] [1woq]
  • SWISS-PROT database: [Q7WT42]
  • Domain organization of [Q7WT42_ARTSK] by SWISSPFAM
  • Other resources with information on 1WOQ
  • Community annotation for 1WOQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science