1WPB Structural Genomics, Unknown Function date Sep 01, 2004
title Structure Of Escherichia Coli Yfbu Gene Product
authors D.Borek, Y.Chen, M.Zheng, T.Skarina, A.Savchenko, A.Edwards, Z.Otw Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein Yfbu
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Yfbu
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 2 3
R_factor 0.190 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
230.521 230.521 230.521 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, GOL enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (499 Kb) [Save to disk]
  • Biological Unit Coordinates (1wpb.pdb1.gz) 731 Kb
  • Biological Unit Coordinates (1wpb.pdb2.gz) 730 Kb
  • Biological Unit Coordinates (1wpb.pdb3.gz) 126 Kb
  • Biological Unit Coordinates (1wpb.pdb4.gz) 127 Kb
  • Biological Unit Coordinates (1wpb.pdb5.gz) 127 Kb
  • Biological Unit Coordinates (1wpb.pdb6.gz) 128 Kb
  • Biological Unit Coordinates (1wpb.pdb7.gz) 126 Kb
  • Biological Unit Coordinates (1wpb.pdb8.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 1WPB
  • CSU: Contacts of Structural Units for 1WPB
  • Likely Quarternary Molecular Structure file(s) for 1WPB
  • Structure Factors (2363 Kb)
  • Retrieve 1WPB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WPB from S2C, [Save to disk]
  • Re-refined 1wpb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1WPB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WPB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WPB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wpba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1wpbb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1wpbc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1wpbd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1wpbe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1wpbf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1wpbg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1wpbh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1wpbi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1wpbj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1wpbk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1wpbl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1wpbm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1wpbn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1wpbo_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1wpbp_, region P [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wpb_C] [1wpb_A] [1wpb_N] [1wpb_P] [1wpb_I] [1wpb_J] [1wpb_D] [1wpb_K] [1wpb_F] [1wpb_B] [1wpb_O] [1wpb_G] [1wpb] [1wpb_H] [1wpb_L] [1wpb_E] [1wpb_M]
  • SWISS-PROT database: [Q1R9C1]
  • Domain organization of [Q1R9C1_ECOUT] by SWISSPFAM
    • Other resources with information on 1WPB
  • Community annotation for 1WPB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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