1XAX Structural Genomics, Unknown Function date Aug 26, 2004
title Nmr Structure Of Hi0004, A Putative Essential Gene Product F Haemophilus Influenzae
authors D.C.Yeh, J.F.Parsons, L.M.Parsons, F.Liu, E.Eisenstein, J.Orban, SFunction Project (S2f)
compound source
Molecule: Hypothetical Upf0054 Protein Hi0004
Chain: A
Engineered: Yes
 Organism_scientific: Haemophilus Influenzae
Organism_taxid: 727
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1XM5
Gene
Ontology
ChainFunctionProcessComponent
A
  • metalloendopeptidase activit...
  • nuclease activity
  • endonuclease activity
  • endoribonuclease activity


    • Primary referenceNMR structure of HI0004, a putative essential gene product from Haemophilus influenzae, and comparison with the X-ray structure of an Aquifex aeolicus homolog., Yeh DC, Parsons LM, Parsons JF, Liu F, Eisenstein E, Orban J, Protein Sci 2005 Feb;14(2):424-30. Epub 2005 Jan 04. PMID:15632286
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (705 Kb) [Save to disk]
  • Biological Unit Coordinates (1xax.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 1XAX
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1XAX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XAX from S2C, [Save to disk]
    • View 1XAX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XAX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XAX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xax] [1xax_A]
  • SWISS-PROT database: [P71335]
  • Domain organization of [Y004_HAEIN] by SWISSPFAM
    • Other resources with information on 1XAX
  • Community annotation for 1XAX at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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