OCA Atlas for 1XM5

1XM5

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

note

1XM5 is a representative structure

related structures

by homologous chain: 1XAX

Gene
Ontology

Chain	Function	Process	Component
C, B, A, D	metalloendopeptidase activit...

Primary reference

The ybeY protein from Escherichia coli is a metalloprotein., Zhan C, Fedorov EV, Shi W, Ramagopal UA, Thirumuruhan R, Manjasetty BA, Almo SC, Fiser A, Chance MR, Fedorov AA, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2005 Nov 1;61(Pt, 11):959-63. Epub 2005 Oct 20. PMID:16511207

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]

Biological Unit Coordinates (1xm5.pdb1.gz) 26 Kb

Biological Unit Coordinates (1xm5.pdb2.gz) 26 Kb

Biological Unit Coordinates (1xm5.pdb3.gz) 25 Kb

Biological Unit Coordinates (1xm5.pdb4.gz) 25 Kb

LPC: Ligand-Protein Contacts for 1XM5

CSU: Contacts of Structural Units for 1XM5

Likely Quarternary Molecular Structure file(s) for 1XM5

Structure Factors (293 Kb)

Retrieve 1XM5 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1XM5 from S2C, [Save to disk]

Re-refined 1xm5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1XM5 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xm5] [1xm5_A] [1xm5_B] [1xm5_C] [1xm5_D]

SWISS-PROT database: [P0A898]

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