1XPJ Structural Genomics, Unknown Function date Oct 08, 2004
title Crystal Structure Of Mcsg Target Apc26283 From Vibrio Choler
authors J.S.Brunzelle, G.Minasov, L.Shuvalova, F.R.Collart, W.F.Anderson Center For Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Vibrio Cholerae
Organism_taxid: 666
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 1 21 1
R_factor 0.201 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.729 52.888 72.215 90.00 90.20 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand HG, TLA enzyme
note 1XPJ is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (1xpj.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 1XPJ
  • CSU: Contacts of Structural Units for 1XPJ
  • Likely Quarternary Molecular Structure file(s) for 1XPJ
  • Structure Factors (228 Kb)
  • Retrieve 1XPJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XPJ from S2C, [Save to disk]
  • Re-refined 1xpj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1XPJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XPJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XPJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xpja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1xpjb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1xpjc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1xpjd_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xpj] [1xpj_C] [1xpj_A] [1xpj_D] [1xpj_B]
  • SWISS-PROT database: [Q9KVB4]
  • Domain organization of [Q9KVB4_VIBCH] by SWISSPFAM
    • Other resources with information on 1XPJ
  • Community annotation for 1XPJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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