1XXU Oxidoreductase date Nov 08, 2004
title Crystal Structure Of Ahpe From Mycrobacterium Tuberculosis, Peroxiredoxin
authors S.Li, N.A.Peterson, M.Y.Kim, C.Y.Kim, L.W.Hung, M.Yu, T.Lekin, B.W. J.S.Lott, E.N.Baker, Tb Structural Genomics Consortium (Tbsgc
compound source
Molecule: Hypothetical Protein Rv2238cmt2298
Chain: A, B, C, D
Synonym: 1-Cys Peroxiredoxin
Ec: 1.11.1.7
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rv2238c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Pri
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex Hta
symmetry Space Group: P 42
R_factor 0.242 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.199 148.199 33.864 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Oxidoreductase E.C.1.11.1.7 BRENDA
related structures by homologous chain: 1XVW
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • peroxidase activity
  • thioredoxin peroxidase activ...
  • antioxidant activity
  • peroxiredoxin activity


  • Primary referenceCrystal Structure of AhpE from Mycobacterium tuberculosis, a 1-Cys peroxiredoxin., Li S, Peterson NA, Kim MY, Kim CY, Hung LW, Yu M, Lekin T, Segelke BW, Lott JS, Baker EN, J Mol Biol. 2005 Mar 4;346(4):1035-46. Epub 2005 Jan 25. PMID:15701515
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (1xxu.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (1xxu.pdb2.gz) 50 Kb
  • CSU: Contacts of Structural Units for 1XXU
  • Likely Quarternary Molecular Structure file(s) for 1XXU
  • Structure Factors (504 Kb)
  • Retrieve 1XXU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XXU from S2C, [Save to disk]
  • Re-refined 1xxu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XXU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XXU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XXU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xxu_B] [1xxu_A] [1xxu_D] [1xxu] [1xxu_C]
  • SWISS-PROT database: [P65688]
  • Domain organization of [Y2238_MYCTU] by SWISSPFAM
  • Other resources with information on 1XXU
  • Community annotation for 1XXU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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