1Y8X		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MSE	enzyme
note	1Y8X is a representative structure
related structures	by homologous chain: 1YOV
Gene Ontology	Chain Function Process Component B
Primary reference	Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1., Huang DT, Paydar A, Zhuang M, Waddell MB, Holton JM, Schulman BA, Mol Cell. 2005 Feb 4;17(3):341-50. PMID:15694336

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (1y8x.pdb1.gz) 43 Kb LPC: Ligand-Protein Contacts for 1Y8X CSU: Contacts of Structural Units for 1Y8X Likely Quarternary Molecular Structure file(s) for 1Y8X Structure Factors (87 Kb) Retrieve 1Y8X in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y8X from S2C, [Save to disk] Re-refined 1y8x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Y8X in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y8x] [1y8x_A] [1y8x_B] SWISS-PROT database: [Q8TBC4] [P61081] Domains found in 1Y8X: [E2_bind] [UBCc ] by SMART

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