1YOV	Signaling Protein	date	Jan 28, 2005
title	Insights Into The Ubiquitin Transfer Cascade From The Refine Structure Of The Activating Enzyme For Nedd8
authors	H.Walden, M.S.Podgorski, B.A.Schulman
compound		source
Molecule: Amyloid Protein-Binding Protein 1 Chain: A, C Synonym: Amyloid Beta Precursor Protein-Binding Protein 1, App-Bp1, Protooncogene Protein 1, Hpp1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Appbp1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ubiquitin-Activating Enzyme E1c Chain: B, D Synonym: Nedd8-Activating Enzyme E1c, Ubiquitin-Activating Homolog; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube1c, Uba3 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.236 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.400 123.600 198.200 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	ZN	enzyme
note	1YOV supersedes 1NGV
related structures	by homologous chain: 1TT5, 1Y8X
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Insights into the ubiquitin transfer cascade from the structure of the activating enzyme for NEDD8., Walden H, Podgorski MS, Schulman BA, Nature 2003 Mar 20;422(6929):330-4. PMID:12646924

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (297 Kb) [Save to disk] Biological Unit Coordinates (1yov.pdb1.gz) 150 Kb Biological Unit Coordinates (1yov.pdb2.gz) 145 Kb LPC: Ligand-Protein Contacts for 1YOV CSU: Contacts of Structural Units for 1YOV Likely Quarternary Molecular Structure file(s) for 1YOV Retrieve 1YOV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YOV from S2C, [Save to disk]

View 1YOV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YOV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YOV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yov_C] [1yov_B] [1yov] [1yov_D] [1yov_A] SWISS-PROT database: [Q8TBC4] [Q13564] Domain organization of [UBA3_HUMAN] [ULA1_HUMAN] by SWISSPFAM Domain found in 1YOV: [E2_bind ] by SMART

Other resources with information on 1YOV

Community annotation for 1YOV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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