1Y8Z	Transferase Dna	date	Dec 14, 2004
title	Alpha-Glucosyltransferase In Complex With Udp And A 13-Mer D Containing A Hmu Base At 1.9 A Resolution
authors	L.Lariviere, N.Sommer, S.Morera
compound		source
Molecule: 5'-D(Gpaptpapcptp(5hu)Papgpaptpapg)- Chain: C Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Cptpaptpcptpgpapg)-3' Chain: D Engineered: Yes		Synthetic: Yes
Molecule: Dna Alpha-Glucosyltransferase Chain: A, B Synonym: Agt Ec: 2.4.1.26 Engineered: Yes		Organism_scientific: Enterobacteria Phage T4 Organism_taxid: 10665 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Xl1blue Expression_system_vector_type: Plasmid Expression_system_plasmid: Proexhtb
symmetry	Space Group: P 1 21 1	R_factor 0.208 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.263 114.655 86.143 90.00 89.49 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	5HU, CL, CME, GOL, NCO, UDP	enzyme	Transferase E.C.2.4.1.26 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural Evidence of a Passive Base-flipping Mechanism for AGT, an Unusual GT-B Glycosyltransferase., Lariviere L, Sommer N, Morera S, J Mol Biol 2005 Sep 9;352(1):139-50. PMID:16081100

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk] Biological Unit Coordinates (1y8z.pdb1.gz) 146 Kb LPC: Ligand-Protein Contacts for 1Y8Z CSU: Contacts of Structural Units for 1Y8Z Likely Quarternary Molecular Structure file(s) for 1Y8Z Structure Factors (503 Kb) Retrieve 1Y8Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y8Z from S2C, [Save to disk] Re-refined 1y8z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Y8Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Y8Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Y8Z, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y8z] [1y8z_B] [1y8z_C] [1y8z_D] [1y8z_A] SWISS-PROT database: [P04519] Domain organization of [GSTA_BPT4] by SWISSPFAM

Other resources with information on 1Y8Z

Community annotation for 1Y8Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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