1YEE	Catalytic Antibody	date	Apr 15, 1997
title	Structure Of A Catalytic Antibody, Igg2a Fab Fragment (D2.5)
authors	B.Golinelli-Pimpaneau, M.Knossow
compound		source
Molecule: Igg2a Fab Fragment (D2.5) Chain: L Other_details: Transition State Analogue		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
Molecule: Igg2a Fab Fragment (D2.5) Chain: H Other_details: Transition State Analogue		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
symmetry	Space Group: P 1 21 1	R_factor 0.204 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.930 76.980 45.800 90.00 94.68 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	PNB	enzyme
related structures	by homologous chain: 1CT8, 1OAK, 43C9
Primary reference	Structural convergence in the active sites of a family of catalytic antibodies., Charbonnier JB, Golinelli-Pimpaneau B, Gigant B, Tawfik DS, Chap R, Schindler DG, Kim SH, Green BS, Eshhar Z, Knossow M, Science 1997 Feb 21;275(5303):1140-2. PMID:9027317

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (1yee.pdb1.gz) 69 Kb LPC: Ligand-Protein Contacts for 1YEE CSU: Contacts of Structural Units for 1YEE Likely Quarternary Molecular Structure file(s) for 1YEE Retrieve 1YEE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YEE from S2C, [Save to disk]

View 1YEE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YEE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YEE, from MSDmotif at EBI Genome occurence of 1YEE's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1yeeh1, region H:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1yeeh2, region H:114-223 [Jmol] [rasmolscript] [script source]     - Domain d1yeel1, region L:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1yeel2, region L:108-214 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yee] [1yee_H] [1yee_L] SWISS-PROT database: [P01865] Domain organization of [GCAM_MOUSE] by SWISSPFAM Domains found in 1YEE: [IG_like] [IGv ] by SMART

Other resources with information on 1YEE

Community annotation for 1YEE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1YEE from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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