43C9 Immunoglobulin date Mar 10, 1999
title Crystallographic Structure Of The Esterolytic And Amidolytic Antibody
authors M.M.Thayer, E.D.Getzoff, V.A.Roberts
compound source
Molecule: Protein (Immunoglobulin (Light Chain))
Chain: A, C, E, G
Fragment: Fv
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21(De3)

Molecule: Protein (Immunoglobulin (Heavy Chain))
Chain: B, D, F, H
Fragment: Fv
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21(De3)
symmetry Space Group: C 2 2 21
R_factor 0.210 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.130 112.660 245.120 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 1OAK, 1YEE
Primary referenceStructural basis for amide hydrolysis catalyzed by the 43C9 antibody., Thayer MM, Olender EH, Arvai AS, Koike CK, Canestrelli IL, Stewart JD, Benkovic SJ, Getzoff ED, Roberts VA, J Mol Biol 1999 Aug 13;291(2):329-45. PMID:10438624
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (43c9.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (43c9.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (43c9.pdb3.gz) 39 Kb
  • Biological Unit Coordinates (43c9.pdb4.gz) 40 Kb
  • CSU: Contacts of Structural Units for 43C9
  • Likely Quarternary Molecular Structure file(s) for 43C9
  • Structure Factors (401 Kb)
  • Retrieve 43C9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 43C9 from S2C, [Save to disk]
  • Re-refined 43c9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 43C9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 43C9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 43C9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d43c9a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d43c9b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d43c9c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d43c9d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d43c9e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d43c9f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d43c9g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d43c9h_, region H [Jmol] [rasmolscript] [script source]
  • Fold representative 43c9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [43c9] [43c9_A] [43c9_E] [43c9_D] [43c9_C] [43c9_G] [43c9_B] [43c9_H] [43c9_F]
  • SWISS-PROT database: [P01820]
  • Domain organization of [HVM44_MOUSE] by SWISSPFAM
  • Domain found in 43C9: [IGv ] by SMART
  • Other resources with information on 43C9
  • Community annotation for 43C9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 43C9 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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