1YF6 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BCL, BPH, CDL, CL, FE2, GOL, HTO, LDA, PO4, SPO, U10 enzyme
related structures by homologous chain: 1AIJ, 1E6D, 1EYS
Gene
Ontology
ChainFunctionProcessComponent
H
  • electron transporter, transf...


    • L


    M


    Primary referenceQuinone (Q(B)) Reduction by B-Branch Electron Transfer in Mutant Bacterial Reaction Centers from Rhodobacter sphaeroides: Quantum Efficiency and X-ray Structure(,)., Paddock ML, Chang C, Xu Q, Abresch EC, Axelrod HL, Feher G, Okamura MY, Biochemistry 2005 May 10;44(18):6920-8. PMID:15865437
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (1yf6.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 1YF6
  • CSU: Contacts of Structural Units for 1YF6
  • Likely Quarternary Molecular Structure file(s) for 1YF6
  • Structure Factors (727 Kb)
  • Retrieve 1YF6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YF6 from S2C, [Save to disk]
  • Re-refined 1yf6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YF6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YF6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YF6, from MSDmotif at EBI
  • Fold representative 1yf6 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yf6] [1yf6_H] [1yf6_L] [1yf6_M]
  • SWISS-PROT database: [P0C0Y7] [P0C0Y8] [P0C0Y9]
  • Belongs to the photosynthetic reaction center (prc) family according to TCDB.
  • Domain organization of [RCEH_RHOSH] [RCEL_RHOSH] [RCEM_RHOSH] by SWISSPFAM
    • Other resources with information on 1YF6
  • Community annotation for 1YF6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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