1YH8	Hydrolase	date	Jan 07, 2005
title	Crystal Structure Of Aquifex Aeolicus Lpxc Deacetylase Compl Palmitate
authors	M.Hernick, H.A.Gennadios, D.A.Whittington, K.M.Rusche, D.W.Chris C.A.Fierke
compound		source
Molecule: Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase; Chain: A, B Synonym: Udp-3-O-Acyl-Glcnac Deacetylase Ec: 3.5.1.- Engineered: Yes Mutation: Yes		Organism_scientific: Aquifex Aeolicus Organism_taxid: 63363 Gene: Lpxc, Enva Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
symmetry	Space Group: P 61	R_factor 0.201 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.610 101.610 124.180 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	CL, PAM, ZN	enzyme	Hydrolase E.C.3.5.1 BRENDA
related structures	by homologous chain: 1XXE, 1YHC
Gene Ontology	Chain Function Process Component A, B
Primary reference	UDP-3-O-((R)-3-hydroxymyristoyl)-N-acetylglucosamine Deacetylase Functions through a General Acid-Base Catalyst Pair Mechanism., Hernick M, Gennadios HA, Whittington DA, Rusche KM, Christianson DW, Fierke CA, J Biol Chem 2005 Apr 29;280(17):16969-78. Epub 2005 Feb 10. PMID:15705580

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (1yh8.pdb1.gz) 89 Kb LPC: Ligand-Protein Contacts for 1YH8 CSU: Contacts of Structural Units for 1YH8 Likely Quarternary Molecular Structure file(s) for 1YH8 Retrieve 1YH8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YH8 from S2C, [Save to disk]

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Visual 3D analysis of 1YH8

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YH8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yh8] [1yh8_A] [1yh8_B] SWISS-PROT database: [O67648] Domain organization of [LPXC_AQUAE] by SWISSPFAM

Other resources with information on 1YH8

Community annotation for 1YH8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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