1XXE Hydrolase date Nov 04, 2004
title Rdc Refined Solution Structure Of The Aalpxctu-514 Complex
authors B.E.Coggins, A.L.Mcclerren, L.Jiang, X.Li, J.Rudolph, O.Hindsgaul, C.R.H.Raetz, P.Zhou
compound source
Molecule: Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase;
Chain: A
Synonym: Udp-3-O-Acyl-Glcnac Deacetylase
Ec: 3.5.1.-
Engineered: Yes
Other_details: Complexed With Tu-514
Organism_scientific: Aquifex Aeolicus
Organism_taxid: 63363
Gene: Lpxc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
methodSolution NMR
ligand TUX, ZN enzyme Hydrolase E.C.3.5.1 BRENDA
note 1XXE supersedes 1NZT
related structures by homologous chain: 1YH8
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRefined solution structure of the LpxC-TU-514 complex and pKa analysis of an active site histidine: insights into the mechanism and inhibitor design., Coggins BE, McClerren AL, Jiang L, Li X, Rudolph J, Hindsgaul O, Raetz CR, Zhou P, Biochemistry 2005 Feb 1;44(4):1114-26. PMID:15667205
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1852 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1XXE
  • CSU: Contacts of Structural Units for 1XXE
  • Original NMR restraints for 1XXE from PDB
  • Retrieve 1XXE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XXE from S2C, [Save to disk]
  • View 1XXE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XXE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XXE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xxea2, region A:128-270 [Jmol] [rasmolscript] [script source]
        - Domain d1xxea1, region A:3-127 [Jmol] [rasmolscript] [script source]
  • Fold representative 1xxe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xxe] [1xxe_A]
  • SWISS-PROT database: [O67648]
  • Domain organization of [LPXC_AQUAE] by SWISSPFAM
  • Other resources with information on 1XXE
  • Community annotation for 1XXE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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