1YLK Unknown Function date Jan 19, 2005
title Crystal Structure Of Rv1284 From Mycobacterium Tuberculosis With Thiocyanate
authors A.S.Covarrubias, A.M.Larsson, M.Hogbom, J.Lindberg, T.Bergfors, C.Bjorkelid, S.L.Mowbray, T.Unge, T.A.Jones, Structural Proteom Europe (Spine)
compound source
Molecule: Hypothetical Protein Rv1284mt1322
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Gene: Rv1284
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Ai
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcrt7
symmetry Space Group: F 2 2 2
R_factor 0.181 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.164 154.074 156.943 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand SCN, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure and function of carbonic anhydrases from Mycobacterium tuberculosis., Suarez Covarrubias A, Larsson AM, Hogbom M, Lindberg J, Bergfors T, Bjorkelid C, Mowbray SL, Unge T, Jones TA, J Biol Chem 2005 May 13;280(19):18782-9. Epub 2005 Mar 6. PMID:15753099
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (1ylk.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (1ylk.pdb2.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 1YLK
  • CSU: Contacts of Structural Units for 1YLK
  • Likely Quarternary Molecular Structure file(s) for 1YLK
  • Structure Factors (339 Kb)
  • Retrieve 1YLK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YLK from S2C, [Save to disk]
  • Re-refined 1ylk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YLK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YLK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YLK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ylk_B] [1ylk] [1ylk_A] [1ylk_C] [1ylk_D]
  • SWISS-PROT database: [P64797]
  • Domain organization of [Y1284_MYCTU] by SWISSPFAM
  • Domain found in 1YLK: [Pro_CA ] by SMART
  • Other resources with information on 1YLK
  • Community annotation for 1YLK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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