1YUF Growth Factor date Apr 01, 1996
title Type Alpha Transforming Growth Factor, Nmr, 16 Models Without Energy Minimization
authors F.J.Moy, G.T.Montelione, H.A.Scheraga
compound source
Molecule: Transforming Growth Factor Alpha
Chain: A
Synonym: Tgf-Alpha, H-Tgf-Alpha
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Human Tgf-Alpha 1yuf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pte5
Expression_system_gene: Human Tgf-Alpha 1yuf
methodSolution NMR
related structures by homologous chain: 1MOX, 1YUG
Primary referenceSolution structure of human type-alpha transforming growth factor determined by heteronuclear NMR spectroscopy and refined by energy minimization with restraints., Moy FJ, Li YC, Rauenbuehler P, Winkler ME, Scheraga HA, Montelione GT, Biochemistry 1993 Jul 27;32(29):7334-53. PMID:8338831
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1YUF
  • Retrieve 1YUF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YUF from S2C, [Save to disk]
  • View 1YUF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YUF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YUF, from MSDmotif at EBI
  • Genome occurence of 1YUF's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1yuf__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1yuf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yuf_A] [1yuf]
  • SWISS-PROT database: [P01135]
  • Domain organization of [TGFA_HUMAN] by SWISSPFAM
  • Domain found in 1YUF: [EGF ] by SMART
  • Other resources with information on 1YUF
  • Community annotation for 1YUF at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1YUF from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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