1MOX Transferase Growth Factor date Sep 10, 2002
title Crystal Structure Of Human Epidermal Growth Factor Receptor 1-501) In Complex With Tgf-Alpha
authors T.P.J.Garrett, N.M.Mckern, M.Lou, T.C.Elleman, T.E.Adams, G.O.Lov J.Zhu, F.Walker, M.J.Frenkel, P.A.Hoyne, R.N.Jorissen, E.C.Nice, A.W.Burgess, C.W.Ward
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A, B
Fragment: Extracellular Fragment
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Lec8

Molecule: Transforming Growth Factor Alpha
Chain: C, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.237 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.590 198.710 78.900 90.00 102.03 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand BMA, CD, CL, FUC, MAN, NAG, PT enzyme Transferase E.C.2.7.1.112 BRENDA
note 1MOX is a representative structure
related structures by homologous chain: 1YUF, 1YY9
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a truncated epidermal growth factor receptor extracellular domain bound to transforming growth factor alpha., Garrett TP, McKern NM, Lou M, Elleman TC, Adams TE, Lovrecz GO, Zhu HJ, Walker F, Frenkel MJ, Hoyne PA, Jorissen RN, Nice EC, Burgess AW, Ward CW, Cell 2002 Sep 20;110(6):763-73. PMID:12297049
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (1mox.pdb1.gz) 178 Kb
  • LPC: Ligand-Protein Contacts for 1MOX
  • CSU: Contacts of Structural Units for 1MOX
  • Likely Quarternary Molecular Structure file(s) for 1MOX
  • Retrieve 1MOX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MOX from S2C, [Save to disk]
  • View 1MOX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MOX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MOX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1moxa1, region A:1-162 [Jmol] [rasmolscript] [script source]
        - Domain d1moxa3, region A:163-311 [Jmol] [rasmolscript] [script source]
        - Domain d1moxa2, region A:312-480 [Jmol] [rasmolscript] [script source]
        - Domain d1moxa4, region A:481-500 [Jmol] [rasmolscript] [script source]
        - Domain d1moxb1, region B:1-162 [Jmol] [rasmolscript] [script source]
        - Domain d1moxb3, region B:163-311 [Jmol] [rasmolscript] [script source]
        - Domain d1moxb2, region B:312-480 [Jmol] [rasmolscript] [script source]
        - Domain d1moxb4, region B:481-501 [Jmol] [rasmolscript] [script source]
        - Domain d1moxc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1moxd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1mox from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mox_B] [1mox_C] [1mox_A] [1mox] [1mox_D]
  • SWISS-PROT database: [P00533] [P01135]
  • Domain organization of [EGFR_HUMAN] [TGFA_HUMAN] by SWISSPFAM
  • Domains found in 1MOX: [EGF] [FU ] by SMART
  • Other resources with information on 1MOX
  • Community annotation for 1MOX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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