1YY9 Immune System Transferase date Feb 24, 2005
title Structure Of The Extracellular Domain Of The Epidermal Growt Receptor In Complex With The Fab Fragment Of Cetuximaberbi C225
authors S.Li, K.R.Schmitz, P.D.Jeffrey, J.J.W.Wiltzius, P.Kussie, K.M.Fer
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A
Fragment: Unp Residues 25-642
Synonym: Receptor Tyrosine-Protein Kinase Erbb-1
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_atcc_number: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Cetuximab Fab Light Chain
Chain: C
Engineered: Yes

Organism_scientific: Mus Musculus, Homo Sapiens
Organism_common: House Mouse, Human
Organism_taxid: 10090,9606
Strain: ,
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_strain: Sp20-Ag15
Expression_system_atcc_number: Crl-1581
Expression_system_cell: Mouse Myeloma Cell Line
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdhl2

Molecule: Cetuximab Fab Heavy Chain
Chain: D
Engineered: Yes

Organism_scientific: Mus Musculus, Homo Sapiens
Organism_common: House Mouse, Human
Organism_taxid: 10090,9606
Strain: ,
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_strain: Sp20-Ag15
Expression_system_atcc_number: Crl-1581
Expression_system_cell: Mouse Myeloma Cell Line
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdhl2
symmetry Space Group: P 1 21 1
R_factor 0.239 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.823 70.861 147.122 90.00 102.48 90.00
method X-Ray Diffractionresolution 2.61 Å
ligand BMA, MAN, NAG, NDG enzyme Transferase E.C.2.7.10.1 BRENDA
note 1YY9 (Molecule of the Month:pdb126)
related structures by homologous chain: 1MOX, 1NGW, 1NQL, 1U8L
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for inhibition of the epidermal growth factor receptor by cetuximab., Li S, Schmitz KR, Jeffrey PD, Wiltzius JJ, Kussie P, Ferguson KM, Cancer Cell 2005 Apr;7(4):301-11. PMID:15837620
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (1yy9.pdb1.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 1YY9
  • CSU: Contacts of Structural Units for 1YY9
  • Likely Quarternary Molecular Structure file(s) for 1YY9
  • Structure Factors (264 Kb)
  • Retrieve 1YY9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YY9 from S2C, [Save to disk]
  • Re-refined 1yy9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YY9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YY9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YY9, from MSDmotif at EBI
  • Fold representative 1yy9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yy9] [1yy9_A] [1yy9_C] [1yy9_D]
  • SWISS-PROT database: [P00533]
  • Domain organization of [EGFR_HUMAN] by SWISSPFAM
  • Domains found in 1YY9: [FU] [IG_like] [IGv ] by SMART
  • Other resources with information on 1YY9
  • Community annotation for 1YY9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science