1YXQ Crystal structure of actin in complex with swinholide A date
authors Klenchin, V.A., King, R., Tanaka, J., Marriott, G., Rayment, I.
compound source
symmetry
R_factor
R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.01
ligand ATP, EDO, HIC, MG, SWI enzyme
related structures by homologous chain: 1ESV, 1YVN
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of swinholide a binding to actin., Klenchin VA, King R, Tanaka J, Marriott G, Rayment I, Chem Biol 2005 Mar;12(3):287-91. PMID:15797212
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (1yxq.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 1YXQ
  • CSU: Contacts of Structural Units for 1YXQ
  • Likely Quarternary Molecular Structure file(s) for 1YXQ
  • Structure Factors (353 Kb)
  • Retrieve 1YXQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YXQ from S2C, [Save to disk]
  • Re-refined 1yxq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YXQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YXQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YXQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yxq_B] [1yxq_A] [1yxq]
  • SWISS-PROT database: [P68135]
  • Domain organization of [ACTS_RABIT] by SWISSPFAM
  • Domain found in 1YXQ: [ACTIN ] by SMART
    • Other resources with information on 1YXQ
  • Community annotation for 1YXQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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