1YVN Structural Protein date Mar 23, 1999
title The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1.
authors S.M.Vorobiev, L.D.Belmont, D.G.Drubin, S.C.Almo
compound source
Molecule: Protein (Actin)
Chain: A
Mutation: Yes
Other_details: Mg-Atp Bound Actin
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Act1-159
Other_details: The Gene Name Is Act.

Molecule: Protein (Gelsolin)
Chain: G
Fragment: Fragment 1
Engineered: Yes
Other_details: Ca(2+)-Bound Protein

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pmw172
Other_details: Synthetic Gene
symmetry Space Group: C 1 2 1
R_factor 0.187 R_Free 0.235
length a length b length c angle alpha angle beta angle gamma
176.098 68.077 54.691 90.00 102.24 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ATP, CA, MG, SO4 enzyme
note 1YVN (Molecule of the Month:pdb19)
related structures by homologous chain: 1ESV, 1KXP, 1MDU, 1YXQ


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (1yvn.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (1yvn.pdb2.gz) 169 Kb
  • LPC: Ligand-Protein Contacts for 1YVN
  • CSU: Contacts of Structural Units for 1YVN
  • Likely Quarternary Molecular Structure file(s) for 1YVN
  • Retrieve 1YVN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YVN from S2C, [Save to disk]
  • View 1YVN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YVN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YVN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1yvna2, region A:147-375 [Jmol] [rasmolscript] [script source]
        - Domain d1yvna1, region A:4-146 [Jmol] [rasmolscript] [script source]
        - Domain d1yvng_, region G [Jmol] [rasmolscript] [script source]
  • Fold representative 1yvn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yvn_G] [1yvn_A] [1yvn]
  • SWISS-PROT database: [P60010] [P06396]
  • Domain organization of [ACT_YEAST] [GELS_HUMAN] by SWISSPFAM
  • Domains found in 1YVN: [ACTIN] [GEL ] by SMART
  • Other resources with information on 1YVN
  • Community annotation for 1YVN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science