1Z83 Transferase date Mar 29, 2005
title Crystal Structure Of Human Ak1a In Complex With Ap5a
authors P.Filippakopoulos, G.Bunkoczi, A.Jansson, A.Schreurs, S.Knapp, A. F.Von Delft, M.Sundstrom, Structural Genomics Consortium (Sgc
compound source
Molecule: Adenylate Kinase 1
Chain: A, B, C
Synonym: Atp-Amp Transphosphorylase, Ak1, Myokinase
Ec: 2.7.4.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ak1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Plic-Sgc
Expression_system_plasmid: Hak1a-Plic
symmetry Space Group: C 1 2 1
R_factor 0.169 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.194 46.259 119.576 90.00 116.01 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand AP5, SO4, ZN enzyme Transferase E.C.2.7.4.3 BRENDA
related structures by homologous chain: 3ADK
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • adenylate kinase activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (1z83.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (1z83.pdb2.gz) 69 Kb
  • Biological Unit Coordinates (1z83.pdb3.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1Z83
  • CSU: Contacts of Structural Units for 1Z83
  • Likely Quarternary Molecular Structure file(s) for 1Z83
  • Structure Factors (376 Kb)
  • Retrieve 1Z83 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z83 from S2C, [Save to disk]
  • Re-refined 1z83 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z83 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z83
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Z83, from MSDmotif at EBI
  • Fold representative 1z83 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z83_C] [1z83_B] [1z83] [1z83_A]
  • SWISS-PROT database: [P00568]
  • Domain organization of [KAD1_HUMAN] by SWISSPFAM
  • Other resources with information on 1Z83
  • Community annotation for 1Z83 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Adenylate Kinase (the movie)
  • Images from IMB Jena Image Library of Biological Macromolecules.

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