3ADK Transferase(Phosphotransferase) date Nov 19, 1987
title Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution
authors G.E.Schulz
compound source
Molecule: Adenylate Kinase
Chain: A
Ec: 2.7.4.3
Engineered: Yes
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
symmetry Space Group: P 31 2 1
R_factor 0.193 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.500 48.500 141.000 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand ACE, SO4 enzyme Transferase E.C.2.7.4.3 BRENDA
note 3ADK supersedes 2ADK, 1ADK
related structures by homologous chain: 1Z83
Gene
Ontology
ChainFunctionProcessComponent
A
  • adenylate kinase activity


  • Primary referenceRefined structure of porcine cytosolic adenylate kinase at 2.1 A resolution., Dreusicke D, Karplus PA, Schulz GE, J Mol Biol 1988 Jan 20;199(2):359-71. PMID:2832612
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (3adk.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 3ADK
  • CSU: Contacts of Structural Units for 3ADK
  • Likely Quarternary Molecular Structure file(s) for 3ADK
  • Retrieve 3ADK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ADK from S2C, [Save to disk]
  • View 3ADK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ADK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ADK, from MSDmotif at EBI
  • Genome occurence of 3ADK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3adk__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 3adk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3adk_A] [3adk]
  • SWISS-PROT database: [P00571]
  • Domain organization of [KAD1_PIG] by SWISSPFAM
  • Other resources with information on 3ADK
  • Community annotation for 3ADK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 3ADK from the Database of Macromolecular Movements.
  • Adenylate Kinase (the movie)
  • Images from IMB Jena Image Library of Biological Macromolecules.

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