1ZUO Ligase date May 31, 2005
title Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci) Invol Embryo Attachment And Implantation
authors J.R.Walker, G.V.Avvakumov, H.Cui, E.M.Newman, F.Mackenzie, M.Sund C.Arrowsmith, A.Edwards, A.Bochkarev, S.Dhe-Paganon, Structural Consortium (Sgc)
compound source
Molecule: Hypothetical Protein Loc92912
Chain: A, B
Fragment: Catalytic Domain, Residues 201-363
Ec: 6.3.2.19
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Loc92912
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Lic
symmetry Space Group: I 4 2 2
R_factor 0.200 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.442 126.442 104.872 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BME enzyme Ligase E.C.6.3.2.19 BRENDA
Primary referenceA human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen., Sheng Y, Hong JH, Doherty R, Srikumar T, Shloush J, Avvakumov GV, Walker JR, Xue S, Neculai D, Wan JW, Kim SK, Arrowsmith CH, Raught B, Dhe-Paganon S, Mol Cell Proteomics. 2012 Aug;11(8):329-41. Epub 2012 Apr 10. PMID:22496338
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1zuo.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (1zuo.pdb2.gz) 26 Kb
  • Biological Unit Coordinates (1zuo.pdb3.gz) 197 Kb
  • Biological Unit Coordinates (1zuo.pdb4.gz) 58 Kb
  • Biological Unit Coordinates (1zuo.pdb5.gz) 50 Kb
  • Biological Unit Coordinates (1zuo.pdb6.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1ZUO
  • CSU: Contacts of Structural Units for 1ZUO
  • Likely Quarternary Molecular Structure file(s) for 1ZUO
  • Structure Factors (294 Kb)
  • Retrieve 1ZUO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZUO from S2C, [Save to disk]
  • Re-refined 1zuo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1ZUO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ZUO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZUO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zuo] [1zuo_A] [1zuo_B]
  • SWISS-PROT database: [Q8WVN8]
  • Domain organization of [UB2Q2_HUMAN] by SWISSPFAM
  • Domain found in 1ZUO: [UBCc ] by SMART
    • Other resources with information on 1ZUO
  • Community annotation for 1ZUO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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