1ZVD	Ligase	date	Jun 01, 2005
title	Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The Hect Domain
authors	A.A.Ogunjimi, D.J.Briant, N.Pece-Barbara, C.Le Roy, G.M.Di Gugli P.Kavsak, R.K.Rasmussen, B.T.Seet, F.Sicheri, J.L.Wrana
compound		source
Molecule: Smad Ubiquitination Regulatory Factor 2 Chain: A Fragment: Hect Domain Synonym: Ubiquitin-- Protein Ligase Smurf2, Smad-Specific E Ubiquitin Ligase 2, Hsmurf2; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smurf2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Pproex-Hta
symmetry	Space Group: P 21 21 21	R_factor 0.202 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.359 70.509 152.351 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	MSE, NA, PO4	enzyme	Ligase E.C.6.3.2 BRENDA
note	1ZVD is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Regulation of Smurf2 Ubiquitin Ligase Activity by Anchoring the E2 to the HECT Domain., Ogunjimi AA, Briant DJ, Pece-Barbara N, Le Roy C, Di Guglielmo GM, Kavsak P, Rasmussen RK, Seet BT, Sicheri F, Wrana JL, Mol Cell 2005 Aug 5;19(3):297-308. PMID:16061177

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (1zvd.pdb1.gz) 68 Kb LPC: Ligand-Protein Contacts for 1ZVD CSU: Contacts of Structural Units for 1ZVD Likely Quarternary Molecular Structure file(s) for 1ZVD Structure Factors (241 Kb) Retrieve 1ZVD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZVD from S2C, [Save to disk] Re-refined 1zvd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZVD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZVD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZVD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zvd] [1zvd_A] SWISS-PROT database: [Q9HAU4] Domain organization of [SMUF2_HUMAN] by SWISSPFAM Domain found in 1ZVD: [HECTc ] by SMART

Other resources with information on 1ZVD

Community annotation for 1ZVD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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