1ZVD Ligase date Jun 01, 2005
title Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The Hect Domain
authors A.A.Ogunjimi, D.J.Briant, N.Pece-Barbara, C.Le Roy, G.M.Di Gugli P.Kavsak, R.K.Rasmussen, B.T.Seet, F.Sicheri, J.L.Wrana
compound source
Molecule: Smad Ubiquitination Regulatory Factor 2
Chain: A
Fragment: Hect Domain
Synonym: Ubiquitin-- Protein Ligase Smurf2, Smad-Specific E Ubiquitin Ligase 2, Hsmurf2;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smurf2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pproex-Hta
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.359 70.509 152.351 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand MSE, NA, PO4 enzyme Ligase E.C.6.3.2 BRENDA
note 1ZVD is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRegulation of Smurf2 Ubiquitin Ligase Activity by Anchoring the E2 to the HECT Domain., Ogunjimi AA, Briant DJ, Pece-Barbara N, Le Roy C, Di Guglielmo GM, Kavsak P, Rasmussen RK, Seet BT, Sicheri F, Wrana JL, Mol Cell 2005 Aug 5;19(3):297-308. PMID:16061177
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (1zvd.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 1ZVD
  • CSU: Contacts of Structural Units for 1ZVD
  • Likely Quarternary Molecular Structure file(s) for 1ZVD
  • Structure Factors (241 Kb)
  • Retrieve 1ZVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZVD from S2C, [Save to disk]
  • Re-refined 1zvd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZVD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZVD, from MSDmotif at EBI
  • Fold representative 1zvd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zvd] [1zvd_A]
  • SWISS-PROT database: [Q9HAU4]
  • Domain organization of [SMUF2_HUMAN] by SWISSPFAM
  • Domain found in 1ZVD: [HECTc ] by SMART
  • Other resources with information on 1ZVD
  • Community annotation for 1ZVD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science