1ZVM	Hydrolase	date	Jun 02, 2005
title	Crystal Structure Of Human Cd38: Cyclic-Adp-Ribosyl Syntheta Glycohydrolase
authors	W.Shi, T.Yang, S.C.Almo, V.L.Schramm, A.Sauve
compound		source
Molecule: Adp-Ribosyl Cyclase 1 Chain: A, B, C, D Synonym: Cyclic Adp-Ribose Hydrolase 1, Cadpr Hydrolase 1, Differentiation Antigen Cd38, T10, Acute Lymphoblastic Leuk Antigen Cd38; Ec: 3.2.2.5 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd38 Expression_system: Pichia Expression_system_taxid: 4919 Other_details: The Biologically Significant Dimer May Not B In The Crystal Structure
symmetry	Space Group: P 2 2 21	R_factor 0.228 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 114.439 115.704 98.441 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	SO4	enzyme	Hydrolase E.C.3.2.2.5 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk] Biological Unit Coordinates (1zvm.pdb1.gz) 44 Kb Biological Unit Coordinates (1zvm.pdb2.gz) 43 Kb Biological Unit Coordinates (1zvm.pdb3.gz) 44 Kb Biological Unit Coordinates (1zvm.pdb4.gz) 43 Kb Biological Unit Coordinates (1zvm.pdb5.gz) 84 Kb Biological Unit Coordinates (1zvm.pdb6.gz) 83 Kb Biological Unit Coordinates (1zvm.pdb7.gz) 85 Kb Biological Unit Coordinates (1zvm.pdb8.gz) 84 Kb LPC: Ligand-Protein Contacts for 1ZVM CSU: Contacts of Structural Units for 1ZVM Likely Quarternary Molecular Structure file(s) for 1ZVM Structure Factors (393 Kb) Retrieve 1ZVM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZVM from S2C, [Save to disk] Re-refined 1zvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZVM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZVM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZVM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zvm_C] [1zvm_B] [1zvm] [1zvm_D] [1zvm_A] SWISS-PROT database: [P28907] Domain organization of [CD38_HUMAN] by SWISSPFAM

Other resources with information on 1ZVM

Community annotation for 1ZVM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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