1AG3 Dna date Mar 31, 1997
title Duplex Oligodeoxynucleotide Containing Propanodeoxyguanosine A Two-Base Deletion, Nmr, Minimized Average Structure
authors J.P.Weisenseel, M.P.Stone
compound source
Molecule: Dna (5'-D(Aptpcpgpcpppcpgpgpcpaptpg)
Chain: A
Engineered: Yes
Other_details: Duplex Oligodeoxynucleotide Containing Propanodeoxyguanosine Opposite A Two-Base Deletion;
 Synthetic: Yes

Molecule: Dna (5'-D(Cpaptpgpcpcpgpcpgpapt)-3')
Chain: B
Engineered: Yes
Other_details: Duplex Oligodeoxynucleotide Containing Propanodeoxyguanosine Opposite A Two-Base Deletion
Synthetic: Yes
methodSolution NMR
ligand P enzyme
Primary referenceStructure of a duplex oligodeoxynucleotide containing propanodeoxyguanosine opposite a two-base deletion in the (CpG)3 frame shift hotspot of Salmonella typhimurium hisD3052 determined by 1H NMR and restrained molecular dynamics., Weisenseel JP, Moe JG, Reddy GR, Marnett LJ, Stone MP, Biochemistry 1995 Jan 10;34(1):50-64. PMID:7819223
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1ag3.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 1AG3
  • CSU: Contacts of Structural Units for 1AG3
  • Retrieve 1AG3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AG3 from S2C, [Save to disk]
    • View 1AG3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AG3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AG3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ag3] [1ag3_A] [1ag3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1AG3
  • Community annotation for 1AG3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science