1FJG STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN date
authors Carter, A.P., Clemons, W.M., Brodersen, D.E., Wimberly, B.T., Morgan-Warren, R.J., Ramakrishnan, V.
compound source
symmetry
R_factor
R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand MG, PAR, SCM, SRY, ZN enzyme
note 1FJG (Molecule of the Month:pdb10)
related structures by homologous chain: 1AN7, 1G1X, 1KUQ, 1RSS, 1XMQ
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


V


Primary referenceFunctional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics., Carter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan V, Nature 2000 Sep 21;407(6802):340-8. PMID:11014183
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (956 Kb) [Save to disk]
  • Biological Unit Coordinates (1fjg.pdb1.gz) 939 Kb
  • LPC: Ligand-Protein Contacts for 1FJG
  • CSU: Contacts of Structural Units for 1FJG
  • Likely Quarternary Molecular Structure file(s) for 1FJG
  • Structure Factors (2193 Kb)
  • Retrieve 1FJG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FJG from S2C, [Save to disk]
  • Re-refined 1fjg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FJG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FJG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FJG, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fjgb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fjgc2, region C:107-207 [Jmol] [rasmolscript] [script source]
        - Domain d1fjgc1, region C:2-106 [Jmol] [rasmolscript] [script source]
        - Domain d1fjgd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1fjge2, region E:5-73 [Jmol] [rasmolscript] [script source]
        - Domain d1fjge1, region E:74-154 [Jmol] [rasmolscript] [script source]
        - Domain d1fjgf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1fjgg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1fjgh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1fjgi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1fjgj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1fjgk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1fjgl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1fjgm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1fjgn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1fjgo_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1fjgp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1fjgq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1fjgr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1fjgs_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1fjgt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1fjgv_, region V [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fjg_M] [1fjg_G] [1fjg_H] [1fjg_I] [1fjg_F] [1fjg_Q] [1fjg_O] [1fjg_X] [1fjg_D] [1fjg_S] [1fjg_T] [1fjg_E] [1fjg_B] [1fjg] [1fjg_A] [1fjg_K] [1fjg_P] [1fjg_C] [1fjg_N] [1fjg_R] [1fjg_V] [1fjg_J] [1fjg_L]
  • SWISS-PROT database: [Q5SHN7] [P80376] [Q5SHN3] [P80377] [Q5SHQ1] [Q5SJ76] [Q5SJH3] [Q5SHP7] [Q5SLQ0] [Q5SHP2] [P80380] [P80371] [P80372] [P80373] [Q5SHQ5] [Q5SLP8] [P17291] [Q5SHQ2] [P80374] [Q5SIH3]
  • Domain organization of [RS10_THET8] [RS11_THET8] [RS12_THET8] [RS13_THET8] [RS14Z_THET8] [RS15_THET8] [RS16_THET8] [RS17_THET8] [RS18_THET8] [RS19_THET8] [RS20_THET8] [RS2_THET8] [RS3_THET8] [RS4_THET8] [RS5_THET8] [RS6_THET8] [RS7_THET8] [RS8_THET8] [RS9_THET8] [RSHX_THET8] by SWISSPFAM
  • Domains found in 1FJG: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 1FJG
  • Community annotation for 1FJG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1FJG from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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