1JH7	Hydrolase	date	Jun 27, 2001
title	Semi-Reduced Inhibitor-Bound Cyclic Nucleotide Phosphodieste Arabidopsis Thaliana
authors	A.Hofmann, M.Grella, I.Botos, W.Filipowicz, A.Wlodawer
compound		source
Molecule: Cyclic Phosphodiesterase Chain: A Ec: 3.1.4.- Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11d+
symmetry	Space Group: H 3 2	R_factor 0.214 R_Free 0.399
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.140 101.140 90.000 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	SO4, UVC	enzyme	Hydrolase E.C.3.1.4 BRENDA
related structures	by homologous chain: 1FSI, 1JH6
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structures of the semireduced and inhibitor-bound forms of cyclic nucleotide phosphodiesterase from Arabidopsis thaliana., Hofmann A, Grella M, Botos I, Filipowicz W, Wlodawer A, J Biol Chem 2002 Jan 11;277(2):1419-25. PMID:11694509

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk] Biological Unit Coordinates (1jh7.pdb1.gz) 33 Kb Biological Unit Coordinates (1jh7.pdb2.gz) 190 Kb Biological Unit Coordinates (1jh7.pdb3.gz) 64 Kb LPC: Ligand-Protein Contacts for 1JH7 CSU: Contacts of Structural Units for 1JH7 Likely Quarternary Molecular Structure file(s) for 1JH7 Structure Factors (50 Kb) Retrieve 1JH7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JH7 from S2C, [Save to disk] Re-refined 1jh7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JH7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JH7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JH7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jh7a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jh7_A] [1jh7] SWISS-PROT database: [O04147] Domain organization of [CPD_ARATH] by SWISSPFAM

Other resources with information on 1JH7

Community annotation for 1JH7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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