1MCE Immunoglobulin date Feb 25, 1993
title Principles And Pitfalls In Designing Site Directed Peptide L
authors A.B.Edmundson, D.L.Harris, Z.C.Fan, L.W.Guddat
compound source
Molecule: Immunoglobulin Lambda Dimer Mcg (Light Chain)
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Peptide N-Acetyl-L-Gln-D-Phe-L-His-D-Pro-B-Ala-Oh
Chain: P
Engineered: Yes

symmetry Space Group: P 31 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.300 72.300 185.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand ACE, BAL, DPN, DPR, HIS enzyme
related structures by homologous chain: 1MCD, 1MCJ
Primary referencePrinciples and pitfalls in designing site-directed peptide ligands., Edmundson AB, Harris DL, Fan ZC, Guddat LW, Schley BT, Hanson BL, Tribbick G, Geysen HM, Proteins 1993 Jul;16(3):246-67. PMID:8346191
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (1mce.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 1MCE
  • CSU: Contacts of Structural Units for 1MCE
  • Likely Quarternary Molecular Structure file(s) for 1MCE
  • Retrieve 1MCE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MCE from S2C, [Save to disk]
  • View 1MCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MCE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MCE, from MSDmotif at EBI
  • Genome occurence of 1MCE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mcea1, region A:1-111 [Jmol] [rasmolscript] [script source]
        - Domain d1mcea2, region A:112-216 [Jmol] [rasmolscript] [script source]
        - Domain d1mceb1, region B:1-111 [Jmol] [rasmolscript] [script source]
        - Domain d1mceb2, region B:112-216 [Jmol] [rasmolscript] [script source]
  • Fold representative 1mce from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mce] [1mce_B] [1mce_A] [1mce_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 1MCE: [IG_like] [IGv ] by SMART
  • Other resources with information on 1MCE
  • Community annotation for 1MCE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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