1OXC Sugar Binding Protein date Apr 02, 2003
title Lecb (Pa-Lii) In Complex With Fucose
authors R.Loris, D.Tielker, K.E.Jaeger, L.Wyns
compound source
Molecule: Hypothetical Protein Lecb
Chain: A, B, C, D
Synonym: Lecb
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Lecb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22a
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.088 73.058 99.889 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand CA, FUC, FUL, SO4 enzyme
related structures by homologous chain: 1OUS, 1W8F
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis of carbohydrate recognition by the lectin LecB from Pseudomonas aeruginosa., Loris R, Tielker D, Jaeger KE, Wyns L, J Mol Biol 2003 Aug 22;331(4):861-70. PMID:12909014
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (1oxc.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 1OXC
  • CSU: Contacts of Structural Units for 1OXC
  • Likely Quarternary Molecular Structure file(s) for 1OXC
  • Structure Factors (1812 Kb)
  • Retrieve 1OXC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OXC from S2C, [Save to disk]
  • Re-refined 1oxc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1OXC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OXC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1OXC 1OXCA 1OXCB 1OXCC 1OXCD from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OXC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oxca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1oxcb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1oxcc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1oxcd_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oxc_D] [1oxc_C] [1oxc_B] [1oxc] [1oxc_A]
  • SWISS-PROT database: [Q9HYN5]
  • Domain organization of [Q9HYN5_PSEAE] by SWISSPFAM
    • Other resources with information on 1OXC
  • Community annotation for 1OXC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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