authors Fulop, V.
compound source
R_Free 0.206
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
ligand CSD, CSX, GOL, SGL, SGM enzyme
related structures by homologous chain: 1H2W, 1O6G

Primary referenceProlyl oligopeptidase: an unusual beta-propeller domain regulates proteolysis., Fulop V, Bocskei Z, Polgar L, Cell 1998 Jul 24;94(2):161-70. PMID:9695945
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (1qfm.pdb1.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 1QFM
  • CSU: Contacts of Structural Units for 1QFM
  • Likely Quarternary Molecular Structure file(s) for 1QFM
  • Retrieve 1QFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QFM from S2C, [Save to disk]
  • View 1QFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QFM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1QFM from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QFM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qfma1, region A:1-430 [Jmol] [rasmolscript] [script source]
        - Domain d1qfma2, region A:431-710 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qfm_A] [1qfm]
  • SWISS-PROT database: [P23687]
  • Domain organization of [PPCE_PIG] by SWISSPFAM
  • Other resources with information on 1QFM
  • Community annotation for 1QFM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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