1QWZ Hydrolase date Sep 03, 2003
title Crystal Structure Of Sortase B From S. Aureus Complexed With
authors Y.Zong, S.K.Mazmanian, O.Schneewind, S.V.Narayana
compound source
Molecule: Npqtn Specific Sortase B
Chain: A
Engineered: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Strain: Bl21
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.183 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.482 61.566 45.727 90.00 91.58 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand ETM, NI, SO4 enzyme
note 1QWZ is a representative structure
related structures by homologous chain: 1NG5
Primary referenceThe structure of sortase B, a cysteine transpeptidase that tethers surface protein to the Staphylococcus aureus cell wall., Zong Y, Mazmanian SK, Schneewind O, Narayana SV, Structure (Camb) 2004 Jan;12(1):105-12. PMID:14725770
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1qwz.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 1QWZ
  • CSU: Contacts of Structural Units for 1QWZ
  • Likely Quarternary Molecular Structure file(s) for 1QWZ
  • Structure Factors (243 Kb)
  • Retrieve 1QWZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QWZ from S2C, [Save to disk]
  • Re-refined 1qwz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1QWZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QWZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QWZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qwza_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qwz_A] [1qwz]
  • SWISS-PROT database: [Q8NX63]
  • Domain organization of [Q8NX63_STAAW] by SWISSPFAM
  • Other resources with information on 1QWZ
  • Community annotation for 1QWZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science