1SDW	Oxidoreductase	date	Feb 14, 2004
title	Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygen Bound Peptide And Dioxygen
authors	S.T.Prigge, B.A.Eipper, R.E.Mains, L.M.Amzel
compound		source
Molecule: Peptidyl-Glycine Alpha-Amidating Monooxygenase Chain: A Fragment: Phm Catalytic Core (Residues 43-356 Of Rat Pam) Synonym: Pam Ec: 1.14.17.3 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Strain: Sprague-Dawley Gene: Pam Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_strain: Cho Dg44 Expression_system_cell_line: Chinese Hamster Ovary (Cho) Expression_system_organ: Ovary Expression_system_vector_type: Virus Expression_system_plasmid: Pcis
symmetry	Space Group: P 21 21 21	R_factor 0.197 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.478 68.979 82.108 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	CU, GOL, IYT, NI, OXY	enzyme	Oxidoreductase E.C.1.14.17.3 BRENDA
related structures	by homologous chain: 1PHM
Gene Ontology	Chain Function Process Component A
Primary reference	Dioxygen binds end-on to mononuclear copper in a precatalytic enzyme complex., Prigge ST, Eipper BA, Mains RE, Amzel LM, Science 2004 May 7;304(5672):864-7. PMID:15131304

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (1sdw.pdb1.gz) 57 Kb LPC: Ligand-Protein Contacts for 1SDW CSU: Contacts of Structural Units for 1SDW Likely Quarternary Molecular Structure file(s) for 1SDW Retrieve 1SDW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1SDW from S2C, [Save to disk]

View 1SDW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1SDW

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1SDW, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1sdwa2, region A:199-356 [Jmol] [rasmolscript] [script source]     - Domain d1sdwa1, region A:45-198 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1sdw_A] [1sdw] SWISS-PROT database: [P14925] Domain organization of [AMD_RAT] by SWISSPFAM

Other resources with information on 1SDW

Community annotation for 1SDW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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