1SDW Oxidoreductase date Feb 14, 2004
title Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygen Bound Peptide And Dioxygen
authors S.T.Prigge, B.A.Eipper, R.E.Mains, L.M.Amzel
compound source
Molecule: Peptidyl-Glycine Alpha-Amidating Monooxygenase
Chain: A
Fragment: Phm Catalytic Core (Residues 43-356 Of Rat Pam)
Synonym: Pam
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Strain: Sprague-Dawley
Gene: Pam
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_strain: Cho Dg44
Expression_system_cell_line: Chinese Hamster Ovary (Cho)
Expression_system_organ: Ovary
Expression_system_vector_type: Virus
Expression_system_plasmid: Pcis
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.226
length a length b length c angle alpha angle beta angle gamma
69.478 68.979 82.108 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand CU, GOL, IYT, NI, OXY enzyme Oxidoreductase E.C. BRENDA
related structures by homologous chain: 1PHM

Primary referenceDioxygen binds end-on to mononuclear copper in a precatalytic enzyme complex., Prigge ST, Eipper BA, Mains RE, Amzel LM, Science 2004 May 7;304(5672):864-7. PMID:15131304
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (1sdw.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 1SDW
  • CSU: Contacts of Structural Units for 1SDW
  • Likely Quarternary Molecular Structure file(s) for 1SDW
  • Retrieve 1SDW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SDW from S2C, [Save to disk]
  • View 1SDW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SDW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SDW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sdwa2, region A:199-356 [Jmol] [rasmolscript] [script source]
        - Domain d1sdwa1, region A:45-198 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sdw_A] [1sdw]
  • SWISS-PROT database: [P14925]
  • Domain organization of [AMD_RAT] by SWISSPFAM
  • Other resources with information on 1SDW
  • Community annotation for 1SDW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science