1UBX	Transferase	date	Oct 14, 1996
title	Structure Of Farnesyl Pyrophosphate Synthetase
authors	L.C.Tarshis, P.Proteau, C.D.Poulter, J.C.Sacchettini
compound		source
Molecule: Farnesyl Diphosphate Synthase Chain: A Synonym: Fps Ec: 2.5.1.1 Engineered: Yes Mutation: Yes Other_details: Complexed With Farnesyl Diphosphate And Magn		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Organ: Liver Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Puc
symmetry	Space Group: I 41 2 2	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.700 88.700 276.300 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	FPP, MG	enzyme	Transferase E.C.2.5.1.1 BRENDA
related structures	by homologous chain: 1UBV, 1UBW
Gene Ontology	Chain Function Process Component A dimethylallyltranstransferas... geranyltranstransferase acti... transferase activity metal ion binding lipid metabolic process steroid biosynthetic process... cholesterol biosynthetic pro... steroid metabolic process cholesterol metabolic proces... isoprenoid biosynthetic proc... sterol biosynthetic process geranyl diphosphate biosynth... farnesyl diphosphate biosynt... cytoplasm
Primary reference	Regulation of product chain length by isoprenyl diphosphate synthases., Tarshis LC, Proteau PJ, Kellogg BA, Sacchettini JC, Poulter CD, Proc Natl Acad Sci U S A 1996 Dec 24;93(26):15018-23. PMID:8986756

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (1ubx.pdb1.gz) 117 Kb LPC: Ligand-Protein Contacts for 1UBX CSU: Contacts of Structural Units for 1UBX Likely Quarternary Molecular Structure file(s) for 1UBX Retrieve 1UBX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UBX from S2C, [Save to disk]

View 1UBX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1UBX

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1UBX, from MSDmotif at EBI Genome occurence of 1UBX's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ubx__, region [Jmol] [rasmolscript] [script source] Fold representative 1ubx from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ubx_A] SWISS-PROT database: [P08836] Domain organization of [FPPS_CHICK] by SWISSPFAM Alignments of the sequence of 1UBX with the sequences similar proteins can be viewed for 1UBX's classification [FPPS_CHICK] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FPPS_CHICK] at ProtoMap. Click on the Cluster number.

Other resources with information on 1UBX

Community annotation for 1UBX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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