1UBX Transferase date Oct 14, 1996
title Structure Of Farnesyl Pyrophosphate Synthetase
authors L.C.Tarshis, P.Proteau, C.D.Poulter, J.C.Sacchettini
compound source
Molecule: Farnesyl Diphosphate Synthase
Chain: A
Synonym: Fps
Ec: 2.5.1.1
Engineered: Yes
Mutation: Yes
Other_details: Complexed With Farnesyl Diphosphate And Magn
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Puc
symmetry Space Group: I 41 2 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.700 88.700 276.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand FPP, MG enzyme Transferase E.C.2.5.1.1 BRENDA
related structures by homologous chain: 1UBV, 1UBW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRegulation of product chain length by isoprenyl diphosphate synthases., Tarshis LC, Proteau PJ, Kellogg BA, Sacchettini JC, Poulter CD, Proc Natl Acad Sci U S A 1996 Dec 24;93(26):15018-23. PMID:8986756
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1ubx.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 1UBX
  • CSU: Contacts of Structural Units for 1UBX
  • Likely Quarternary Molecular Structure file(s) for 1UBX
  • Retrieve 1UBX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UBX from S2C, [Save to disk]
  • View 1UBX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UBX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UBX, from MSDmotif at EBI
  • Genome occurence of 1UBX's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ubx__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1ubx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ubx] [1ubx_A]
  • SWISS-PROT database: [P08836]
  • Domain organization of [FPPS_CHICK] by SWISSPFAM
  • Other resources with information on 1UBX
  • Community annotation for 1UBX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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