1VRP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ADP, IOM, MG, NO3 enzyme
note 1VRP supersedes 1N16
related structures by homologous chain: 1G0W, 1QH4
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceThe 2.1 A structure of Torpedo californica creatine kinase complexed with the ADP-Mg(2+)-NO(3)(-)-creatine transition-state analogue complex., Lahiri SD, Wang PF, Babbitt PC, McLeish MJ, Kenyon GL, Allen KN, Biochemistry 2002 Nov 26;41(47):13861-7. PMID:12437342
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (1vrp.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 1VRP
  • CSU: Contacts of Structural Units for 1VRP
  • Likely Quarternary Molecular Structure file(s) for 1VRP
  • Structure Factors (487 Kb)
  • Retrieve 1VRP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VRP from S2C, [Save to disk]
  • Re-refined 1vrp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VRP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VRP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VRP, from MSDmotif at EBI
  • Fold representative 1vrp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vrp] [1vrp_A] [1vrp_B]
  • SWISS-PROT database: [P04414]
  • Domain organization of [KCRM_TORCA] by SWISSPFAM
  • Other resources with information on 1VRP
  • Community annotation for 1VRP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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